Changes in version 2.1.0 (2025-11-04)                  

  - Fix MH OR in confounding() function (@AkiShiroshita, #4).
  - Renaming arguments in probsens(), confounders_limit(),
    probsens_limit(), probsens_irr_conf(), and probsens_sel(), with
    warnings.
  - A number of functions have change names. The old versions still
    work, but are deprecated and will be removed in the next version.
      - boot.bias() -> boot_bias()
      - confounders.array() -> confounders_array()
      - confounders.emm() -> confounders_emm()
      - confounders.ext() -> confounders_ext()
      - confounders.limit() -> confounders_limit()
      - confounders.poly() -> confounders_poly()
      - misclassification() -> misclass()
      - misclassification.cov() -> misclass_cov()
      - probsens.conf() -> probsens_conf()
      - probsens.irr() -> probsens_irr()
      - probsens.irr.conf() -> probsens_irr_conf()
      - probsens.sel() -> probsens_sel()

                 Changes in version 2.0.0 (2025-05-15)                  

  - Using NORTA transformation, replacing sampling from a standard
    uniform distribution, for correlations between sensitivity and
    specificity of exposure classification among cases and controls in
    Probabilistic Bias Analyses (PBA).
  - Replacing log-logistic and logit-normal distributions by a truncated
    normal distribution in PBA (package truncnorm).
  - Due to these breaking changes in PBA functions, legacy versions are
    also available but will be removed in future versions.
  - Remove Or.sel from multidimBias.

                 Changes in version 1.3.0 (2023-08-30)                  

  - Adding bias-adjusting for exposure misclassification using
    predictive values.
  - Adding start-up message.

                 Changes in version 1.2.0 (2023-05-16)                  

  - Fix CI for OR in plot.booted (@codiewood, #2)
  - Replaced dot-dot notation by after_stat(density) in plot.probsens
    and plot.booted
  - misclassification_cov replaced by misclassification.cov
  - Standard output for confounders.ext, confounders.limit, and
    confounders.array
  - Suggest tidyr instead of tidyverse

                 Changes in version 1.1.0 (2021-08-20)                  

  - Fix confidence interval values in plotting output of probsens.
  - Fix bug that created integer overflow in rare cases when 2-by-2
    table cells were very large.
  - Update documentation.

                 Changes in version 1.0.0 (2021-02-23)                  

  - Provide default values for variables in mbias.
  - Update M-bias plot by using ggdag (and dagitty).
  - Add beta distribution to probabilistic bias analyses.
  - Plotting functions for probabilistic bias analyses.
  - Review criteria to remove negative cell counts in probabilistic bias
    analyses.
  - Add citation and DOI.

                 Changes in version 0.9.6 (2020-03-06)                  

  - Fix formulas in probsens.conf.

                 Changes in version 0.9.5 (2020-02-03)                  

  - Fix selection-bias factor in selection which was returning a
    constant value.

                 Changes in version 0.9.4 (2019-09-02)                  

  - Fix bias_parms in selection to use a single selection-bias factor
    (was skipping it and returning NAs).

                 Changes in version 0.9.3 (2018-12-03)                  

  - Update description of parms in confounders, confounders.emm, and
    confounders.poly
  - New function confounders.array, sensitivity analysis for unmeasured
    confounders based on confounding imbalance among exposed and
    unexposed (Schneeweiss, 2006)
  - Deprecated bias parameters removed from function multidimBias.
    Please use bias_parms instead.
  - New function confounders.evalue, computing E-value to assess bias
    due to unmeasured confounder (VanderWeele and Ding, 2017)
  - New function multiple.bias allowing to extract 2-by-2 table from an
    episensr object to feed another function (multiple bias analysis)

                 Changes in version 0.9.2 (2017-11-13)                  

  - Fix bug for distributions and computations of OR/RR in probsens.conf
  - Update distributions in probsens.irr.conf
  - Add example using probsens.conf in vignette

                 Changes in version 0.9.1 (2017-09-12)                  

  - Fix bug when using triangular distribution in probsens.conf function
    for prevalence of exposure among the non-exposed (as producing NaNs)
    (#1).

                 Changes in version 0.9.0 (2017-08-16)                  

  - Add misclassification_cov for a misclassified covariate (confounder
    or effect modifier).
  - As such, this (wrongly) added option into misclassification in the
    previous version is now removed.
  - Add computation of confidence interval for odds ratio as per Chu et
    al. for exposure misclassification.
  - Use bias_parms instead of bias in misclassification function.

                 Changes in version 0.8.0 (2017-01-04)                  

  - Fix bug when building 2-by-2 table.

  - Various formatting improvements in output of confounders,
    confounders.emm, misclassification and selection functions.

  - Standardize use of bias_parms.

  - Add vignette.

  - Selection bias factor now available in output of selection function.

  - Add bootstrap option

                 Changes in version 0.7.2 (2016-02-03)                  

  - Fix 2-by-2 tables when variables are provided instead of a matrix.

                 Changes in version 0.7.1 (2015-10-05)                  

  - Fix R version dependency (R >= 3.2.0)

                 Changes in version 0.7.0 (2015-10-01)                  

  - Harmonization of arguments across functions.

  - New distributions added to probsens series of functions: constant,
    logit-logistic, logit-normal, log-logistic, and log-normal.

  - Probabilistic analysis of person-time data added with probsens.irr
    for exposure misclassification, and probsens.irr.conf for unmeasured
    confounder.

  - Sensitivity analysis to correct for selection bias caused by M bias
    with mbias function, including DAG plot and print function.

  - Fix CI formatting.

  - NAMESPACE: add imports to stats functions to avoid new R CMD CHECK
    warnings